Great drawings
Focusing on the under tray first, smoothing and directing flow is all well and good but you have to make use of it afterwards with a decent diffuser. Diffusers gradually increase the volume along their length which causes air to expand, travel faster and thus pressure drops. If you add a decent diffuser then you will have to use in coming air at the front to increase downforce too. The picture you supplied of the front of a race car previously is a great example of what's needed. Just smoothing under flow will not reduce lift per se, but will make your car easier to move through air at speed (drag). Wheels create lots of turbulence and directing air away from them is indeed desirable.
Spoilers do exactly that they spoil the flow over a surface that follows, however they also increase drag, there is some benefit in fitting a rear spoiler on cars, the turbulence created by a spoiler can reduce the wake effect behind the car. That is when a body moves through air it leaves a lower pressure zone behind which in effect sucks the car back, filling that void with turbulent air reduces the effect. However what works with your car is the difficult part. Dependant on size of spoiler there can also be some increase in down force, though at the cost of increased drag. Aero foils are better at producing downforce.
What I'm trying to say is that you need to decide what you want to achieve and to achieve that is going to cost you somewhere else. Ultimately anything that makes your car significantly more efficient below is going to come at the cost of ground clearance.
As I have been writing this, it has occurred to me why not fit a diffuser to each side starting from the front and ending just behind the wheel facing out, hmmmmmm.......
Feel some simulations coming and that really is the crux, to do it properly, your car that is, you could spend a fortune on trying different bits and configurations, however a few days on Ansys