I think the clear indicator lights depend on the colour of the body. I'd definately agree they look better on silver, black and possibly red, but other colours look to me a little monochromatic without the orange to set them off (i'm thinking Maldives or Toledo blue, Alpine white, etc.).
But, you can get clear lights in the pre-facelift style, and to me the facelift rear lights are just wrong. They just look like an attempt to fit in bar-style lights to match the rest of the range, when they really didn't need to. If they wanted to put some rectangular elements in then, by all means, swap out the pointless frenchfry and rear fog/reversing elements for horizontal bars. But the circular tail lights and semi-circle brake lights really enhance the "flaming" feel of the back.
As for the facelift front, I can take it or leave it. I favour round fog lamps in general (they just look like they'll work better), but I'd agree the shape of the facelift lower grille is more purposeful. But I'd also echo the "after thought" sentiment regarding the fold line below the headlamps; if it's an attempt to continue the wing shoulder line then where's it continuing to!?! It'd look much better without it. I'm also not wild about the reflector behind the headlamps; looks like a Boxster hommage which would be ok if it was an indicator, but that jobs already taken. Just looks cluttered.