If a standard lead acid is used probably no problem, just shorter natural life and perhaps likelihood of problems when the battery slowly dies, hopefully with the roof not half open.
BMW probably took on board the AGM battery having a longer life, as they seemed to be used a lot on stop/start vehicles, thus reducing warranty claims at say 3 year lead acid life span. And AGM probably more robust for use with the hood and engine not running.
They just need more looking after regards charging, hence the coding.