I'm guessing the aux-in socket for the grey unit was a retrofit, as I don't think the aux-in sockets became standard until late 2006. If your new black unit is from a post-2006 car, then maybe that has something to do with it. Obvious, but have you tried to adjust the tone/volume of the aux source on the new head unit? From past experience with a 2007 car I know it's possible, but I can't do it on my black head unit - which is early 2006 and has a retrofit aux-in socket.
So basically, I've no idea either... :idunno: